Research Informatics: Publications

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@book{aligned,
  title = "Engineering Agile Big-Data Systems",
  author = "Kevin Feeney and Jim Davies and James Welch and Sebastian Hellmann and Christian Dirschl and Andreas Koller and Pieter Francois and Arkadiusz Marciniak",
  year = "2018",
  editor = "Kevin Feeney and Jim Davies and James Welch and Sebastian Hellmann and Christian Dirschl and Andreas Koller and Pieter Francois and Arkadiusz Marciniak",
  isbn = "9788770220163",
  url = "https://www.riverpublishers.com/research_details.php?book_id=659",
}

@inbook{lifecycle,
  title = "Software Project Management for Combined Software and Data Engineering",
  author = "Seyyed M. Shah and James Welch and Jim Davies and Jeremy Gibbons",
  year = "2017",
  booktitle = "Software Project Management for Distributed Computing: Life-Cycle Methods for Developing Scalable and Reliable Tools",
  editor = "Zaigham Mahmood",
  isbn = "978-3-319-54324-6",
  pages = "367-385",
  publisher = "Springer International Publishing",
  url = "https://sshah.co.uk/files/combined-software-data-engineering-shah-17.pdf",
  doi = "10.1007/978-3-319-54325-3_15",
}

@article{cancergrid,
  title = "The CancerGrid Experience: Metadata-Based Model-Driven Engineering for Clinical Trials",
  author = "Jim Davies and Jeremy Gibbons and Steve Harris and Charles Crichton",
  year = "2014",
  journal = "Science of Computer Programming",
  month = "September",
  pages = "126-143",
  url = "http://www.comlab.ox.ac.uk/people/jeremy.gibbons/publications/cancergrid.pdf",
  volume = "89B",
  doi = "10.1016/j.scico.2013.02.010",
}

@inproceedings{fff,
  title = "Form Follows Function: Model-Driven Engineering for Clinical Trials",
  author = "Jim Davies and Jeremy Gibbons and Radu Calinescu and Charles Crichton and Steve Harris and Andrew Tsui",
  year = "2011",
  booktitle = "International Symposium on Foundations of Health Information Engineering and Systems",
  month = "August",
  pages = "21-38",
  publisher = "Springer",
  series = "LNCS",
  url = "http://www.comlab.ox.ac.uk/jeremy.gibbons/publications/fff.pdf",
  volume = "7151",
  doi = "10.1007/978-3-642-32355-3_2",
}

@misc{imagescorer,
  title = "Deep Zoom and Touch Screen for Tissue Microarray Image Scoring",
  author = "Charles Crichton and Jim Davies and Jeremy Gibbons and Andrew Tsui and James Brenton and Carlos Caldas and Lorna Morris",
  year = "2010",
  howpublished = "Poster at Microsoft External Research Symposium",
}

@article{Crichton*2009:Model,
  title = "Metadata-Driven Software for Clinical Trials",
  author = "Charles Crichton and Jim Davies and Jeremy Gibbons and Steve Harris and Andrew Tsui and James Brenton",
  year = "2009",
  booktitle = "ICSE Workshop on Software Engineering and Health Care",
  month = "May",
  url = "http://www.comlab.ox.ac.uk/people/jeremy.gibbons/publications/consort.pdf",
  doi = "10.1109/SEHC.2009.5069600",
}

@inproceedings{Davies*2009:Kathmandu,
  title = "Model-Driven Support for a Vaccine Study in Kathmandu",
  author = "Jim Davies and Jeremy Gibbons and Steve Harris and Jane Metz and Andrew J. Pollard and Matthew Snape",
  year = "2009",
  booktitle = "Microsoft eScience Workshop",
  month = "October",
  url = "http://www.comlab.ox.ac.uk/jeremy.gibbons/publications/vaccines.pdf",
}

@inproceedings{Brenton*2008:Accelerating,
  title = "Accelerating Cancer Research Using Semantics-Driven Technology",
  author = "James Brenton and Jim Davies and Jeremy Gibbons and Steve Harris",
  year = "2008",
  address = "Indianapolis, IN",
  booktitle = "Microsoft eScience Workshop",
  month = "December",
  url = "http://www.comlab.ox.ac.uk/people/jeremy.gibbons/publications/accelerating.pdf",
}

@article{Simpson_et_al_2008c,
  title = "A healthcare-driven framework for facilitating the secure sharing of data across organisational boundaries",
  author = "Simpson, A.~C. and Power, D.~J. and Russell, D. and Slaymaker, M.~A. and Kouadri-Mostefaoui, G. and Ma, X. and Wilson, G.",
  year = "2008",
  journal = "Studies in Health Technology and Informatics",
  pages = "3--12",
  volume = "138",
}

@inproceedings{Tromans et al, 2008,
  title = "The Application of a Service-Oriented Infrastructure to Support Medical Research in Mammography",
  author = "Tromans, C. and Brady, J.~M. and Power, D.~J. and Slaymaker, M.~A. and Russell, D. and Simpson, A.~C.",
  year = "2008",
  booktitle = "Proceedings of MICCAI-Grid 2008",
  pages = "43--52",
}

@inproceedings{Simpson_2008,
  title = "On the need for user-defined fine-grained access control policies for social networking applications",
  author = "Simpson, A.~C.",
  year = "2008",
  booktitle = "Proceedings of the 2008 workshop on Security in Opportunistic and SOCial networks (SOSOC 2008)",
  pages = "Article number 1",
  publisher = "ACM",
}

@inproceedings{Slaymaker_et_al_2008,
  title = "On the facilitation of fine-grained access to distributed healthcare data",
  author = "M. A. Slaymaker, D. J. Power, D. Russell and A. C. Simpson",
  year = "2008",
  booktitle = "Proceedings of Secure Data Management 2008",
}

@inproceedings{Simpson_et_al_2008b,
  title = "A healthcare-driven framework for facilitating the secure sharing of data across organisational boundaries",
  author = "Simpson, A.~C. and Power, D.~J. and Russell, D. and Slaymaker, M.~A. and Kouadri-Mostefaoui, G. and Ma, X. and Wilson, G.",
  year = "2008",
  booktitle = "Proceedings of HealthGrid 2008",
}

@inproceedings{Slaymaker_et_al_2008,
  title = "Accessing and aggregating legacy data sources for healthcare research, delivery and training",
  author = "M. A. Slaymaker and D. J. Power and D. Russell and G. Wilson and A. C. Simpson",
  year = "2008",
  booktitle = "Proceedings of SAC 2008",
}

@inproceedings{Davies*2008:Evolving,
  title = "Evolving Health Informatics: Semantic Frameworks and Metadata-Driven Architectures",
  author = "Jim Davies and Jeremy Gibbons and Steve Harris and Denise Warzel",
  year = "2008",
  address = "Indianapolis, IN",
  booktitle = "Microsoft eScience Workshop",
  url = "http://www.comlab.ox.ac.uk/people/jeremy.gibbons/publications/evolving.pdf",
}

@incollection{Simpson_et_al_2008,
  title = "The development, testing, and deployment of a web services infrastructure for distributed healthcare delivery, research, and training",
  author = "Simpson, A.~C. and Power, D.~J. and Russell, D. and Slaymaker, M.~A. and Kouadri Mostefaoui, G. and Wilson, G. and Ma, X.",
  year = "2008",
  booktitle = "Managing Web Services Quality: Measuring Outcomes and Effectiveness",
  editor = "Khan, K.",
  pages = "1--22",
  publisher = "Idea Group",
}

@inproceedings{Calinescu*2007:Model,
  title = "Model-Driven Architecture for Cancer Research",
  author = "Radu Calinescu and Steve Harris and Jeremy Gibbons and Jim Davies and Igor Toujilov and Sylvia Nagl",
  year = "2007",
  booktitle = "Software Engineering and Formal Methods",
  month = "sep",
  pages = "59-68",
  url = "http://www.comlab.ox.ac.uk/jeremy.gibbons/publications/cgmda.pdf",
  doi = "10.1109/SEFM.2007.26",
}

@article{Lloyd_et_al_2007a,
  title = "Integrative Biology: The challenges of developing a collaborative research environment for heart and cancer modelling",
  author = "Lloyd, S. and Gavaghan, D.~J. and Simpson, A.~C. and Mascord, M. Sieunarine, C. and Williams, G. and Pitt-Francis, J. and Boyd, D.~R.~S. and Mac Randal, D. and Sastry, L. and Nagella, S. Weeks, K. and Fowler, R. and Hanlon, D. and Handley, J. and de Fabritis, G.",
  year = "2007",
  journal = "Future Generation Computer Systems",
  month = "March",
  number = "3",
  pages = "457--465",
  volume = "23",
}

@article{Simpson_et_al_2007,
  title = "On the development of secure service-oriented architectures to support medical research",
  author = "Simpson, A.~C. and Power, D.~J. and Slaymaker, M.~A. and Russell, D. and Katzarova, M.",
  year = "2007",
  journal = "International Journal of Healthcare Information Systems and Informatics",
  number = "2",
  pages = "75--89",
  volume = "2",
}

@inproceedings{Induruwa_et_al_2007,
  title = "Towards build-time interoperability of workflow definition languages",
  author = "Induruwa-Fernando, S.~D. and Creager, D.~A. and Simpson, A.~C.",
  year = "2007",
  booktitle = "Proceedings of the 9th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing (SYNSAC 2007)",
  pages = "525--532",
  publisher = "IEEE",
}

@article{Ure_et_al_2006,
  title = "Designing for e-health: recurring scenarios in developing grid-based medical imaging systems",
  author = "Ure, J. and Geddes, J. and Mackay, C. and Lloyd, S. and Simpson, A.~C. and Power, D.~J. and Russell, D. and Jirotka, M. and Katzarova, M. and Rossor, M. and Fox, N. and Fletcher, J. and Hill, D. and McLeish, K. and Chen, Y. and Hajnal, J.~V. and Lawrie, S. and Job, D. and McIntosh, A. and Wardlaw, J. and Sandercock, P. and Palmer, J. and Perry, D. and Procter, R. and Hartswood, M. and Slack, R. and Voss, A. and Ho, K. and Bath, P. and Clarke, W. and Watson, G.",
  year = "2006",
  journal = "Studies in Health Technology and Informatics",
  pages = "336--347",
  volume = "120",
}

@article{Power_et_al_2006,
  title = "Securing web services for deployment in health grids",
  author = "Power, D.~J. and Politou, E.~A. and Slaymaker, M.~A. and Simpson, A.~C.",
  year = "2006",
  journal = "Future Generation Computer Systems",
  number = "5",
  pages = "547--570",
  volume = "22",
}