Pras Pathmanathan : Publications
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@article{Mirams2016,
title = "White Paper: Uncertainty and variability in computational and mathematical models of cardiac physiology",
author = "GR Mirams and P Pathmanathan and RA Gray and P Challenor and RH Clayton",
year = "2016",
journal = "Journal of Physiology",
doi = "10.1113/JP271671",
}
@article{Johnstone2016,
title = "Uncertainty and variability in models of the cardiac action potential: can we build trustworthy models?",
author = "RH Johnstone and ET Chang and R Bardenet and TP de Boer and DJ Gavaghan and P Pathmanathan and RH Clayton and GR Mirams",
year = "2016",
journal = "Journal of Molecular and Cellular Cardiology",
pages = "49-62",
volume = "96",
doi = "10.1016/j.yjmcc.2015.11.018",
}
@article{MiramsChaste2013,
title = "Chaste: an open source C++ library for computational physiology and biology",
author = "Mirams, Gary R and Arthurs, Christopher J and Bernabeu, Miguel O and Bordas, Rafel and Cooper, Jonathan and Corrias, Alberto and Davit, Yohan and Dunn, Sara-Jane and Fletcher, Alexander G and Harvey, Daniel G and others",
year = "2013",
journal = "PLoS computational biology",
number = "3",
pages = "e1002970",
publisher = "Public Library of Science San Francisco, USA",
volume = "9",
doi = "10.1371/journal.pcbi.1002970",
}
@article{Zemzemi2012,
title = "Computational assessment of drug-induced effects on the electrocardiogram: from ion channel block to body surface potentials",
author = "N Zemzemi and MO Bernabeu and J Saiz and J Cooper and P Pathmanathan and GR Mirams and J Pitt-Francis and B Rodriguez",
year = "2013",
journal = "British Journal of Pharmacology",
number = "3",
pages = "718-733",
volume = "168",
doi = "10.1111/j.1476-5381.2012.02200.x",
}
@article{Pras_2011_1,
title = "Computational modelling of cardiac electro-physiology: explanation of the variability of results from different numerical solvers",
author = "P. Pathmanathan and M. Bernabeu and S. Niederer and D. Gavaghan and D. Kay",
year = "2012",
journal = "Int. J. Numerical Methods in Biomedical Engineering",
number = "8",
pages = "890-903",
volume = "28",
doi = "10.1002/cnm.2467",
}
@article{IJNMBE2011a,
title = "The significant effect of the choice of ionic current integration method in cardiac electrophysiological simulations",
author = "P.\ Pathmanathan, G.R.\ Mirams, J.A.\ Southern, and J.P.\ Whiteley",
year = "2011",
journal = "International Journal for Numerical Methods in Biomedical Engineering",
pages = "1751--1770",
volume = "27",
doi = "10.1002/cnm.1438",
}
@article{f20ea8a70f839df,
title = "A hybrid approach to multi-scale modelling of cancer",
author = "Osborne, J. M. and Walter, A. and Kershaw, S. K. and Mirams, G. R. and Fletcher, A. G. and Pathmanathan, P. and Gavaghan, D. and Jensen, O. E. and Maini, P. K. and Byrne, H. M.",
year = "2010",
journal = "Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences",
month = "Nov",
number = "1930",
pages = "5013--5028",
volume = "368",
doi = "10.1098/rsta.2010.0173",
}
@article{3940,
title = "A numerical guide to the solution of the bidomain equations of cardiac electrophysiology",
author = "Pathmanathan, Pras and Bernabeu, Miguel O and Bordas, Rafel and Cooper, Jonathan and Garny, Alan and Pitt-Francis, Joe M and Whiteley, Jonathan P and Gavaghan, David J",
year = "2010",
journal = "Progress in biophysics and molecular biology",
number = "2-3",
pages = "136--155",
publisher = "Pergamon",
volume = "102",
doi = "10.1016/j.pbiomolbio.2010.05.006",
}
@article{3745,
title = "Stimulus protocol determines the most computationally-efficient preconditioner for the bidomain equations",
author = "M. Bernabeu, P. Pathmanathan, J. Pitt-Francis, D. Kay",
year = "2010",
journal = "Transactions of Biomedical Engineering",
number = "12",
pages = "2806-15",
volume = "57",
doi = "10.1109/TBME.2010.2078817",
}
@article{3651,
title = "Cardiac electromechanics: the effect of contraction model on the mathematical problem and accuracy of the numerical scheme",
author = "P Pathmanathan, SJ Chapman, DJ Gavaghan, JP Whiteley",
year = "2010",
edition = "63",
journal = "Quarterly Journal of Mechanics and Applied Mathematics",
pages = "375-399",
volume = "3",
}
@article{Whiteley 2010a,
title = "A Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems",
author = "P. Pathmanathan, and J.P. Whiteley, and S.J. Chapman and D.J. Gavaghan",
year = "2010",
journal = "Journal of Applied Mechanics",
pages = "034501",
volume = "77",
doi = "10.1115/1.4000414",
}
@article{Chaste2,
title = "Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library",
author = "Bernabeu, M.O. and Bordas, R. and Pathmanathan, P. and Pitt-Francis, J. and Cooper, J. and Garny, A. and Gavaghan, D.J. and Rodriguez, B. and Southern, J.A. and Whiteley, J.P.",
year = "2009",
journal = "Phil Trans Roy Soc (A)",
month = "May",
number = "1895",
pages = "1907-1930",
volume = "367",
doi = "10.1098/rsta.2008.0309",
}
@article{f20ea014d69195c,
title = "Inverse membrane problems in elasticity",
author = "Pathmanathan, P. and Chapman, SJ and Gavaghan, DJ",
year = "2009",
issn = "00335614",
journal = "QUARTERLY JOURNAL OF MECHANICS AND APPLIED MATHEMATICS ",
keywords = "breast",
month = "Feb",
number = "1",
pages = "67--87",
url = "http://dx.doi.or",
volume = "62",
doi = "10.1093/qjmam/hbn026",
}
@article{cancerchaste1,
title = "An integrative computational model for intestinal tissue renewal",
author = "Van Leeuwen and Ingeborg MM and Mirams, GR and Walter, Alex and Fletcher, A and Murray, P and Osborne, J and Varma, S and Young, SJ and Cooper, J and Doyle, B and others",
year = "2009",
journal = "Cell proliferation",
number = "5",
pages = "617--636",
publisher = "Blackwell Publishing Ltd Oxford, UK",
volume = "42",
doi = "10.1111/j.1365-2184.2009.00627.x",
}
@article{ChasteCPC09,
title = "Chaste: a test-driven approach to software development for biological modelling",
author = "Pitt-Francis, Joe and Pathmanathan, Pras and Bernabeu, Miguel O and Bordas, Rafel and Cooper, Jonathan and Fletcher, Alexander G and Mirams, Gary R and Murray, Philip and Osborne, James M and Walter, Alex and others",
year = "2009",
journal = "Computer Physics Communications",
number = "12",
pages = "2452--2471",
publisher = "North-Holland",
volume = "180",
doi = "10.1016/j.cpc.2009.07.019",
}
@article{3272,
title = "A comparison of numerical methods used for finite element modelling of soft tissue deformation",
author = "P Pathmanathan, DJ Gavaghan and JP Whiteley",
year = "2009",
journal = "The Journal of Strain Analysis for Engineering Design",
pages = "391-406",
volume = "44(5)",
}
@article{3269,
title = "A Numerical Method for Cardiac Mechanoelectric Simulations",
author = "P. Pathmanathan and J.P. Whiteley",
year = "2009",
journal = "Annals of Biomedical Engineering",
pages = "860-873",
volume = "37(5)",
doi = "10.1007/s10439-009-9663-8",
}
@article{chaste_dtm,
title = "A computational study of discrete mechanical tissue models",
author = "P Pathmanathan and J Cooper and A Fletcher and G Mirams and P Murray and J Osborne and J Pitt-Francis and A Walter and S J Chapman",
year = "2009",
journal = "Physical Biology",
number = "3",
volume = "6",
doi = "10.1088/1478-3975/6/3/036001",
}
@article{Chaste.08:Chaste,
title = "Chaste: using agile programming techniques to develop computational biology software",
author = "Pitt-Francis, Joe and Bernabeu, Miguel O and Cooper, Jonathan and Garny, Alan and Momtahan, Lee and Osborne, James and Pathmanathan, Pras and Rodriguez, Blanca and Whiteley, Jonathan P and Gavaghan, David J",
year = "2008",
journal = "Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences",
number = "1878",
pages = "3111--3136",
publisher = "The Royal Society London",
volume = "366",
doi = "10.1098/rsta.2008.0096",
}
@article{3270,
title = "Predicting tumor location by modeling the deformation of the breast",
author = "P. Pathmanathan, and D.J. Gavaghan, and J.P. Whiteley, and S.J. Chapman and J.M. Brady",
year = "2008",
journal = "IEEE Transactions on Biomedical Engineering",
pages = "2471-2480",
volume = "55(10)",
doi = "10.1109/TBME.2008.925714",
}
@inproceedings{2004_1,
title = "Predicting tumour location by simulating large deformations of the breast using a 3D finite element model and nonlinear elasticity",
author = "P. Pathmanathan and D.J. Gavaghan and J.P. Whiteley and J.M. Brady and M.P. Nash and P.F. Nielsen and V. Rajagopal",
year = "2004",
booktitle = "Proceedings of MICCAI 2004",
pages = "217--224",
series = "Lecture Notes in Computer Science",
volume = "3217",
}