Uses of Interface
org.semanticweb.owl.model.OWLOntology

Packages that use OWLOntology
com.clarkparsia.explanation   
com.clarkparsia.explanation.util   
de.uulm.ecs.ai.owl.krssparser   
de.uulm.ecs.ai.owl.krssrenderer   
org.coode.manchesterowlsyntax   
org.coode.obo.parser   
org.coode.owl.functionalparser   
org.coode.owl.functionalrenderer   
org.coode.owl.krssparser   
org.coode.owl.latex   
org.coode.owl.owlxmlparser   
org.coode.owl.rdf.model   
org.coode.owl.rdf.rdfxml   
org.coode.owl.rdf.renderer   
org.coode.owl.rdf.turtle   
org.coode.owl.rdfxml.parser   
org.coode.owlapi.owlxml.renderer   
org.coode.xml   
org.semanticweb.owl   
org.semanticweb.owl.debugging   
org.semanticweb.owl.inference   
org.semanticweb.owl.io   
org.semanticweb.owl.metrics   
org.semanticweb.owl.model   
org.semanticweb.owl.modularity   
org.semanticweb.owl.profiles   
org.semanticweb.owl.util   
uk.ac.manchester.cs.owl   
uk.ac.manchester.cs.owl.dlsyntax   
uk.ac.manchester.cs.owl.inference.dig11   
uk.ac.manchester.cs.owl.mansyntaxrenderer   
uk.ac.manchester.cs.owl.modularity   
uk.ac.manchester.cs.owl.turtle.parser   
 

Uses of OWLOntology in com.clarkparsia.explanation
 

Methods in com.clarkparsia.explanation that return OWLOntology
 OWLOntology SingleExplanationGeneratorImpl.getOntology()
           
 OWLOntology SingleExplanationGenerator.getOntology()
          Returns the ontology according to which the explanations are generated.
 OWLOntology HSTExplanationGenerator.getOntology()
           
 

Methods in com.clarkparsia.explanation with parameters of type OWLOntology
 void SingleExplanationGeneratorImpl.setOntology(OWLOntology ontology)
           
 void SingleExplanationGenerator.setOntology(OWLOntology ont)
          Sets the ontology according to which the explanations are generated.
 void HSTExplanationGenerator.setOntology(OWLOntology ontology)
           
 

Constructors in com.clarkparsia.explanation with parameters of type OWLOntology
DefaultExplanationGenerator(OWLOntologyManager man, OWLReasonerFactory reasonerFactory, OWLOntology ontology, ExplanationProgressMonitor progressMonitor)
           
DefaultExplanationGenerator(OWLOntologyManager man, OWLReasonerFactory reasonerFactory, OWLOntology ontology, OWLReasoner reasoner, ExplanationProgressMonitor progressMonitor)
           
 

Uses of OWLOntology in com.clarkparsia.explanation.util
 

Methods in com.clarkparsia.explanation.util that return types with arguments of type OWLOntology
static java.util.Set<OWLOntology> OntologyUtils.removeAxiom(OWLAxiom axiom, java.util.Set<OWLOntology> ontologies, OWLOntologyManager manager)
          Removes an axiom from all the given ontologies that contains the axiom and returns those ontologies.
 

Methods in com.clarkparsia.explanation.util with parameters of type OWLOntology
static boolean OntologyUtils.containsUnreferencedEntity(OWLOntology ontology, OWLDescription desc)
          Determines if a class description contains any unreferenced entities with respect to the ontology that contains the entailments which are being explained.
 void DefinitionTracker.setOntology(OWLOntology ontology)
           
 

Method parameters in com.clarkparsia.explanation.util with type arguments of type OWLOntology
static void OntologyUtils.addAxiom(OWLAxiom axiom, java.util.Set<OWLOntology> ontologies, OWLOntologyManager manager)
          Add the axiom to all the given ontologies.
static java.util.Set<OWLOntology> OntologyUtils.removeAxiom(OWLAxiom axiom, java.util.Set<OWLOntology> ontologies, OWLOntologyManager manager)
          Removes an axiom from all the given ontologies that contains the axiom and returns those ontologies.
 

Uses of OWLOntology in de.uulm.ecs.ai.owl.krssparser
 

Methods in de.uulm.ecs.ai.owl.krssparser with parameters of type OWLOntology
 OWLOntologyFormat KRSS2OWLParser.parse(OWLOntologyInputSource inputSource, OWLOntology ontology)
           
 void KRSS2Parser.setOntology(OWLOntology ontology, OWLDataFactory dataFactory)
           
 

Uses of OWLOntology in de.uulm.ecs.ai.owl.krssrenderer
 

Methods in de.uulm.ecs.ai.owl.krssrenderer with parameters of type OWLOntology
 void KRSS2OWLSyntaxRenderer.render(OWLOntology ontology, java.io.Writer writer)
           
 void KRSS2OWLObjectRenderer.visit(OWLOntology ontology)
           
 

Constructors in de.uulm.ecs.ai.owl.krssrenderer with parameters of type OWLOntology
KRSS2OWLObjectRenderer(OWLOntology ontology, java.io.Writer writer)
           
 

Uses of OWLOntology in org.coode.manchesterowlsyntax
 

Methods in org.coode.manchesterowlsyntax with parameters of type OWLOntology
 OWLOntologyFormat ManchesterOWLSyntaxOntologyParser.parse(OWLOntologyInputSource inputSource, OWLOntology ontology)
           
 OWLImportsDeclaration ManchesterOWLSyntaxEditorParser.parseImportsDeclaration(OWLOntology ont)
           
 void ManchesterOWLSyntaxEditorParser.parseOntology(OWLOntologyManager manager, OWLOntology ont)
           
 

Uses of OWLOntology in org.coode.obo.parser
 

Methods in org.coode.obo.parser that return OWLOntology
 OWLOntology TagValueHandler.getOntology()
           
 OWLOntology OBOConsumer.getOntology()
           
 OWLOntology AbstractTagValueHandler.getOntology()
           
 

Methods in org.coode.obo.parser with parameters of type OWLOntology
 OWLOntologyFormat OWLOBOParser.parse(OWLOntologyInputSource inputSource, OWLOntology ontology)
           
 

Constructors in org.coode.obo.parser with parameters of type OWLOntology
OBOConsumer(OWLOntologyManager owlOntologyManager, OWLOntology ontology)
           
 

Uses of OWLOntology in org.coode.owl.functionalparser
 

Methods in org.coode.owl.functionalparser with parameters of type OWLOntology
 OWLOntologyFormat OWLFunctionalSyntaxOWLParser.parse(OWLOntologyInputSource inputSource, OWLOntology ontology)
           
 void OWLFunctionalSyntaxParser.setUp(OWLOntologyManager man, OWLOntology ontology)
           
 

Uses of OWLOntology in org.coode.owl.functionalrenderer
 

Methods in org.coode.owl.functionalrenderer with parameters of type OWLOntology
 void OWLFunctionalSyntaxRenderer.render(OWLOntology ontology, java.io.Writer writer)
           
 void OWLObjectRenderer.visit(OWLOntology ontology)
           
 

Constructors in org.coode.owl.functionalrenderer with parameters of type OWLOntology
OWLObjectRenderer(OWLOntologyManager man, OWLOntology ontology, java.io.Writer writer)
           
 

Uses of OWLOntology in org.coode.owl.krssparser
 

Methods in org.coode.owl.krssparser with parameters of type OWLOntology
 OWLOntologyFormat KRSSOWLParser.parse(OWLOntologyInputSource inputSource, OWLOntology ontology)
           
 void KRSSParser.setOntology(OWLOntology ontology, OWLDataFactory dataFactory)
           
 

Uses of OWLOntology in org.coode.owl.latex
 

Methods in org.coode.owl.latex with parameters of type OWLOntology
 void LatexRenderer.render(OWLOntology ontology, java.io.Writer writer)
           
 void LatexObjectVisitor.visit(OWLOntology ontology)
           
 

Uses of OWLOntology in org.coode.owl.owlxmlparser
 

Methods in org.coode.owl.owlxmlparser that return OWLOntology
 OWLOntology OWLXMLParserHandler.getOntology()
           
 OWLOntology OWLOntologyHandler.getOWLObject()
           
 OWLOntology OWLImportsHandler.getOWLObject()
           
 

Methods in org.coode.owl.owlxmlparser with parameters of type OWLOntology
 OWLOntologyFormat OWLXMLParser.parse(OWLOntologyInputSource inputSource, OWLOntology ontology)
           
 

Constructors in org.coode.owl.owlxmlparser with parameters of type OWLOntology
OWLXMLParserHandler(OWLOntologyManager owlOntologyManager, OWLOntology ontology)
          Creates an OWLXML handler.
OWLXMLParserHandler(OWLOntologyManager owlOntologyManager, OWLOntology ontology, OWLElementHandler topHandler)
          Creates an OWLXML handler with the specified top level handler.
 

Uses of OWLOntology in org.coode.owl.rdf.model
 

Methods in org.coode.owl.rdf.model with parameters of type OWLOntology
 void AbstractTranslator.visit(OWLOntology ontology)
           
 

Constructors in org.coode.owl.rdf.model with parameters of type OWLOntology
AbstractTranslator(OWLOntologyManager manager, OWLOntology ontology)
           
RDFTranslator(OWLOntologyManager manager, OWLOntology ontology)
           
 

Uses of OWLOntology in org.coode.owl.rdf.rdfxml
 

Constructors in org.coode.owl.rdf.rdfxml with parameters of type OWLOntology
RDFXMLNamespaceManager(OWLOntologyManager man, OWLOntology ontology)
           
RDFXMLNamespaceManager(OWLOntologyManager man, OWLOntology ontology, OWLOntologyFormat format)
           
RDFXMLRenderer(OWLOntologyManager manager, OWLOntology ontology, java.io.Writer w)
           
RDFXMLRenderer(OWLOntologyManager manager, OWLOntology ontology, java.io.Writer w, OWLOntologyFormat format)
           
 

Uses of OWLOntology in org.coode.owl.rdf.renderer
 

Methods in org.coode.owl.rdf.renderer that return OWLOntology
 OWLOntology RDFRendererBase.getOntology()
           
 

Constructors in org.coode.owl.rdf.renderer with parameters of type OWLOntology
RDFRendererBase(OWLOntology ontology, OWLOntologyManager manager)
           
 

Uses of OWLOntology in org.coode.owl.rdf.turtle
 

Constructors in org.coode.owl.rdf.turtle with parameters of type OWLOntology
TurtleRenderer(OWLOntology ontology, OWLOntologyManager manager, java.io.Writer writer)
           
 

Uses of OWLOntology in org.coode.owl.rdfxml.parser
 

Methods in org.coode.owl.rdfxml.parser that return OWLOntology
 OWLOntology OWLRDFConsumer.getOntology()
           
 

Methods in org.coode.owl.rdfxml.parser with parameters of type OWLOntology
 OWLOntologyFormat RDFXMLParser.parse(OWLOntologyInputSource inputSource, OWLOntology ontology)
           
 

Constructors in org.coode.owl.rdfxml.parser with parameters of type OWLOntology
OWLRDFConsumer(OWLOntologyManager owlOntologyManager, OWLOntology ontology, AnonymousNodeChecker checker)
           
 

Uses of OWLOntology in org.coode.owlapi.owlxml.renderer
 

Methods in org.coode.owlapi.owlxml.renderer with parameters of type OWLOntology
 void OWLXMLRenderer.render(OWLOntology ontology, java.io.Writer writer)
           
 void OWLXMLWriter.startDocument(OWLOntology ontology)
           
 void OWLXMLObjectRenderer.visit(OWLOntology ontology)
           
 

Constructors in org.coode.owlapi.owlxml.renderer with parameters of type OWLOntology
OWLXMLObjectRenderer(OWLOntology ontology, OWLXMLWriter writer)
           
OWLXMLWriter(java.io.Writer writer, XMLWriterNamespaceManager xmlWriterNamespaceManager, OWLOntology ontology)
           
 

Uses of OWLOntology in org.coode.xml
 

Constructors in org.coode.xml with parameters of type OWLOntology
OWLOntologyNamespaceManager(OWLOntologyManager man, OWLOntology ontology)
           
OWLOntologyNamespaceManager(OWLOntologyManager man, OWLOntology ontology, OWLOntologyFormat format)
           
 

Uses of OWLOntology in org.semanticweb.owl
 

Constructors in org.semanticweb.owl with parameters of type OWLOntology
AddClassDescriptionClosureAxiom(OWLDataFactory dataFactory, OWLClass cls, OWLObjectPropertyExpression property, java.util.Set<OWLOntology> ontologies, OWLOntology targetOntology)
          Creates a composite change that will add a closure axiom for a given class along a specified property.
ConvertEquivalentClassesToSuperClasses(OWLDataFactory dataFactory, OWLClass cls, java.util.Set<OWLOntology> ontologies, OWLOntology targetOntology, boolean splitIntersections)
           
ConvertSuperClassesToEquivalentClass(OWLDataFactory dataFactory, OWLClass cls, java.util.Set<OWLOntology> ontologies, OWLOntology targetOntology)
           
CreateValuePartition(OWLDataFactory dataFactory, OWLClass valuePartitionClass, java.util.Set<OWLClass> valuePartionClasses, OWLObjectProperty valuePartitionProperty, OWLOntology targetOntology)
          Creates a composite change that will create a value partition.
MakeClassesMutuallyDisjoint(OWLDataFactory dataFactory, java.util.Set<? extends OWLDescription> descriptions, boolean usePairwiseDisjointAxioms, OWLOntology targetOntology)
          Creates a composite change which makes a set of classes mutually disjoint
MakePrimitiveSubClassesMutuallyDisjoint(OWLDataFactory dataFactory, OWLClass cls, java.util.Set<OWLOntology> ontologies, OWLOntology targetOntology)
           
MakePrimitiveSubClassesMutuallyDisjoint(OWLDataFactory dataFactory, OWLClass cls, java.util.Set<OWLOntology> ontologies, OWLOntology targetOntology, boolean usePairwiseDisjointAxioms)
           
 

Constructor parameters in org.semanticweb.owl with type arguments of type OWLOntology
AddClassDescriptionClosureAxiom(OWLDataFactory dataFactory, OWLClass cls, OWLObjectPropertyExpression property, java.util.Set<OWLOntology> ontologies, OWLOntology targetOntology)
          Creates a composite change that will add a closure axiom for a given class along a specified property.
AmalgamateSubClassAxioms(java.util.Set<OWLOntology> ontologies, OWLDataFactory dataFactory)
           
CoerceConstantsIntoDataPropertyRange(OWLDataFactory dataFactory, java.util.Set<OWLOntology> ontologies)
           
ConvertEquivalentClassesToSuperClasses(OWLDataFactory dataFactory, OWLClass cls, java.util.Set<OWLOntology> ontologies, OWLOntology targetOntology, boolean splitIntersections)
           
ConvertPropertyAssertionsToAnnotations(OWLDataFactory dataFactory, java.util.Set<OWLOntology> ontologies)
           
ConvertSuperClassesToEquivalentClass(OWLDataFactory dataFactory, OWLClass cls, java.util.Set<OWLOntology> ontologies, OWLOntology targetOntology)
           
MakePrimitiveSubClassesMutuallyDisjoint(OWLDataFactory dataFactory, OWLClass cls, java.util.Set<OWLOntology> ontologies, OWLOntology targetOntology)
           
MakePrimitiveSubClassesMutuallyDisjoint(OWLDataFactory dataFactory, OWLClass cls, java.util.Set<OWLOntology> ontologies, OWLOntology targetOntology, boolean usePairwiseDisjointAxioms)
           
RemoveAllDisjointAxioms(OWLDataFactory dataFactory, java.util.Set<OWLOntology> ontologies)
           
SplitSubClassAxioms(java.util.Set<OWLOntology> ontologies, OWLDataFactory dataFactory)
          Creates a composite change to split subclass axioms into multiple more fine grained subclass axioms.
 

Uses of OWLOntology in org.semanticweb.owl.debugging
 

Methods in org.semanticweb.owl.debugging that return OWLOntology
 OWLOntology OWLDebugger.getOWLOntology()
          Gets the OWLOntology that is being debugged.
 OWLOntology AbstractOWLDebugger.getOWLOntology()
           
 

Constructors in org.semanticweb.owl.debugging with parameters of type OWLOntology
BlackBoxOWLDebugger(OWLOntologyManager owlOntologyManager, OWLOntology ontology, OWLSatisfiabilityChecker reasoner)
           
 

Uses of OWLOntology in org.semanticweb.owl.inference
 

Methods in org.semanticweb.owl.inference that return types with arguments of type OWLOntology
 java.util.Set<OWLOntology> OWLReasonerBase.getLoadedOntologies()
          Gets the ontologies that have been loaded into this reasoner.
 java.util.Set<OWLOntology> OWLReasonerAdapter.getLoadedOntologies()
           
 java.util.Set<OWLOntology> NullReasoner.getLoadedOntologies()
           
 

Methods in org.semanticweb.owl.inference with parameters of type OWLOntology
 boolean OWLConsistencyChecker.isConsistent(OWLOntology ontology)
          Checks to see if the ontology that have been loaded into the reasoner are consistent in combination.
 boolean NullReasoner.isConsistent(OWLOntology ontology)
           
 

Method parameters in org.semanticweb.owl.inference with type arguments of type OWLOntology
 void OWLReasonerBase.loadOntologies(java.util.Set<OWLOntology> ontologies)
          Loads the specified ontologies.
 void OWLReasonerAdapter.loadOntologies(java.util.Set<OWLOntology> ontologies)
           
 void NullReasoner.loadOntologies(java.util.Set<OWLOntology> ontologies)
           
 void OWLReasonerBase.unloadOntologies(java.util.Set<OWLOntology> ontologies)
          Unloads the specified ontologies from this reasoner.
 void OWLReasonerAdapter.unloadOntologies(java.util.Set<OWLOntology> ontologies)
           
 void NullReasoner.unloadOntologies(java.util.Set<OWLOntology> ontologies)
          Does nothing in this implementation.
 

Uses of OWLOntology in org.semanticweb.owl.io
 

Methods in org.semanticweb.owl.io with parameters of type OWLOntology
 OWLOntologyFormat OWLParser.parse(OWLOntologyInputSource inputSource, OWLOntology ontology)
          Parses the ontology that has a concrete representation which is pointed to by the specified input source.
 OWLOntologyFormat OWLParser.parse(java.net.URI physicalURI, OWLOntology ontology)
          Parses the ontology that has a concrete representation which is pointed to by the specified physical URI.
 OWLOntologyFormat AbstractOWLParser.parse(java.net.URI physicalURI, OWLOntology ontology)
           
 void OWLRenderer.render(OWLOntology ontology, java.io.OutputStream os)
          Renders the specified ontology to a concrete representation which should be written to a document located at the specified physical URI.
 void AbstractOWLRenderer.render(OWLOntology ontology, java.io.OutputStream os)
           
abstract  void AbstractOWLRenderer.render(OWLOntology ontology, java.io.Writer writer)
          Renders the specified ontology using the specified writer.
 

Uses of OWLOntology in org.semanticweb.owl.metrics
 

Methods in org.semanticweb.owl.metrics that return OWLOntology
 OWLOntology OWLMetric.getOntology()
          Gets the ontology which the value of the metric should be based on.
 OWLOntology AbstractOWLMetric.getOntology()
           
 

Methods in org.semanticweb.owl.metrics that return types with arguments of type OWLOntology
 java.util.Set<OWLOntology> AbstractOWLMetric.getOntologies()
           
 

Methods in org.semanticweb.owl.metrics with parameters of type OWLOntology
 void OWLMetricManager.setOntology(OWLOntology ontology)
           
 void OWLMetric.setOntology(OWLOntology ontology)
          Sets the "root" ontology.
 void AbstractOWLMetric.setOntology(OWLOntology ontology)
           
 

Uses of OWLOntology in org.semanticweb.owl.model
 

Subinterfaces of OWLOntology in org.semanticweb.owl.model
 interface OWLMutableOntology
          Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group Date: 25-Oct-2006
 

Methods in org.semanticweb.owl.model that return OWLOntology
 OWLOntology OWLOntologyManager.createOntology(java.util.Set<OWLAxiom> axioms)
          Creates a new ontology that is initialised to contain specific axioms.
 OWLOntology OWLOntologyManager.createOntology(java.util.Set<OWLAxiom> axioms, java.net.URI ontologyURI)
          Creates a new ontology that has the specified ontology URI and is initialised to contain specific axioms.
 OWLOntology OWLOntologyManager.createOntology(java.net.URI ontologyURI)
          Creates a new (empty) ontology that has the specified ontology URI.
 OWLOntology OWLOntologyManager.createOntology(java.net.URI ontologyURI, java.util.Set<OWLOntology> ontologies)
          Creates a new ontology that has the specified ontology URI and is initialised to contain the axioms that are contained in the specified ontologies.
 OWLOntology OWLOntologyManager.createOntology(java.net.URI ontologyURI, java.util.Set<OWLOntology> ontologies, boolean copyLogicalAxiomsOnly)
          Creates a new ontology that has the specified ontology URI and is initialised to contain the axioms that are contained in the specified ontologies.
 OWLOntology OWLOntologyFactory.createOWLOntology(java.net.URI ontologyURI, java.net.URI physicalURI, OWLOntologyFactory.OWLOntologyCreationHandler handler)
          Creates an (empty) ontology.
 OWLOntology OWLOntologyManager.getImportedOntology(OWLImportsDeclaration declaration)
          Given an imports declaration, obtains the ontology that this imports has been resolved to.
 OWLOntology OWLOntologyChange.getOntology()
          Gets the ontology that the change is/was applied to
 OWLOntology OWLOntologyManager.getOntology(java.net.URI ontologyURI)
          Gets a previously loaded/created ontology that corresponds to the specified ontology URI.
 OWLOntology OWLImportsDeclaration.getSubject()
          Gets the ontology that is the subject of this imports axiom.
 OWLOntology OWLOntologyManager.loadOntology(OWLOntologyInputSource inputSource)
          A convenience method that load an ontology from an input source.
 OWLOntology OWLOntologyManager.loadOntology(java.net.URI ontologyURI)
          Loads the ontology specified by the ontologyURI parameter.
 OWLOntology OWLOntologyManager.loadOntologyFromPhysicalURI(java.net.URI uri)
          A convenience method that loads an ontology from a physical URI.
 OWLOntology OWLOntologyFactory.loadOWLOntology(OWLOntologyInputSource inputSource, OWLOntologyFactory.OWLOntologyCreationHandler handler)
          Creates and loads an OWLOntology.
 OWLOntology OWLOntologyManager.reloadOntology(java.net.URI ontologyURI)
          Reloads an ontology that is already managed by this manager.
 

Methods in org.semanticweb.owl.model that return types with arguments of type OWLOntology
 java.util.Set<OWLOntology> OWLOntologyManager.getImports(OWLOntology ontology)
          Gets the set of ontologies that are directly imported by the specified ontology.
 java.util.Set<OWLOntology> OWLOntology.getImports(OWLOntologyManager ontologyManager)
          Gets the OWLOntology instances that this ontology imports.
 java.util.Set<OWLOntology> OWLOntologyManager.getImportsClosure(OWLOntology ontology)
          Gets the imports closure for the specified ontology.
 java.util.Set<OWLOntology> OWLOntologySetProvider.getOntologies()
           
 java.util.Set<OWLOntology> OWLOntologyManager.getOntologies()
          Gets all of the ontologies that are managed by this manager.
 java.util.Set<OWLOntology> OWLOntologyManager.getOntologies(OWLAxiom axiom)
          Gets the ontologies that are managed by this manager that contain the specified axiom.
 java.util.List<OWLOntology> OWLOntologyManager.getSortedImportsClosure(OWLOntology ontology)
          Gets the topologically ordered imports closure.
 

Methods in org.semanticweb.owl.model with parameters of type OWLOntology
 java.util.List<OWLOntologyChange> OWLOntologyManager.addAxiom(OWLOntology ont, OWLAxiom axiom)
          A convenience method that adds a single axioms to an ontology.
 java.util.List<OWLOntologyChange> OWLOntologyManager.addAxioms(OWLOntology ont, java.util.Set<? extends OWLAxiom> axioms)
          A convenience method that adds a set of axioms to an ontology.
 java.util.Set<OWLAnnotationAxiom> OWLEntity.getAnnotationAxioms(OWLOntology ontology)
           
 java.util.Set<OWLAxiomAnnotationAxiom> OWLAxiom.getAnnotationAxioms(OWLOntology ontology)
          Gets the annotation axioms that annotate this axiom and belong to the specified ontology
 java.util.Set<OWLOntologyAnnotationAxiom> OWLOntology.getAnnotations(OWLOntology subject)
          Gets the ontology annotations whose subject is the specified ontology.
 java.util.Set<OWLAnnotation> OWLEntity.getAnnotations(OWLOntology ontology)
          Obtains annotations on this entity where the annotation have been asserted on the specified entity.
 java.util.Set<OWLAnnotation> OWLEntity.getAnnotations(OWLOntology ontology, java.net.URI annotationURI)
          Obtains the annotations on this entity where the annotation has the specified URI.
 java.util.Map<OWLDataPropertyExpression,java.util.Set<OWLConstant>> OWLIndividual.getDataPropertyValues(OWLOntology ontology)
          Gets the data property values for this individual
 java.util.Set<OWLIndividual> OWLIndividual.getDifferentIndividuals(OWLOntology ontology)
          A convenience method that examines axioms in the specified ontology to determine the individuals that are asserted to be different to this individual.
 java.util.Set<OWLDescription> OWLClass.getDisjointClasses(OWLOntology ontology)
          Gets the classes which have been asserted to be disjoint with this class by axioms in the specified ontology.
 java.util.Set<P> OWLPropertyExpression.getDisjointProperties(OWLOntology ontology)
           
 java.util.Set<OWLDescription> OWLPropertyExpression.getDomains(OWLOntology ontology)
          Gets the asserted domains of this property.
 java.util.Set<OWLDescription> OWLClass.getEquivalentClasses(OWLOntology ontology)
          A convenience method that examines the axioms in the specified ontology and returns the descriptions corresponding to equivalent classes of this class.
 java.util.Set<P> OWLPropertyExpression.getEquivalentProperties(OWLOntology ontology)
          Gets the asserted/told equivalent properties by examining the axioms in the specified ontology.
 java.util.Set<OWLOntology> OWLOntologyManager.getImports(OWLOntology ontology)
          Gets the set of ontologies that are directly imported by the specified ontology.
 java.util.Set<OWLOntology> OWLOntologyManager.getImportsClosure(OWLOntology ontology)
          Gets the imports closure for the specified ontology.
 java.util.Set<OWLIndividual> OWLClass.getIndividuals(OWLOntology ontology)
          Gets the individuals that have been asserted to be an instance of this class by axioms in the speficied ontology.
 java.util.Set<OWLObjectPropertyExpression> OWLObjectPropertyExpression.getInverses(OWLOntology ontology)
           
 java.util.Map<OWLDataPropertyExpression,java.util.Set<OWLConstant>> OWLIndividual.getNegativeDataPropertyValues(OWLOntology ontology)
          Gets the data property values that are explicitly asserted NOT to hold for this individual
 java.util.Map<OWLObjectPropertyExpression,java.util.Set<OWLIndividual>> OWLIndividual.getNegativeObjectPropertyValues(OWLOntology ontology)
          Gets the object property values that are explicitly asserted NOT to hold for this individual
 java.util.Map<OWLObjectPropertyExpression,java.util.Set<OWLIndividual>> OWLIndividual.getObjectPropertyValues(OWLOntology ontology)
          Gets the object property values for this individual.
 OWLOntologyFormat OWLOntologyManager.getOntologyFormat(OWLOntology ontology)
          Gets the ontology format for the specified ontology.
 OWLImportsDeclaration OWLDataFactory.getOWLImportsDeclarationAxiom(OWLOntology subject, java.net.URI importedOntologyURI)
           
 OWLOntologyAnnotationAxiom OWLDataFactory.getOWLOntologyAnnotationAxiom(OWLOntology subject, OWLAnnotation annotation)
           
 java.net.URI OWLOntologyManager.getPhysicalURIForOntology(OWLOntology ontology)
          Gets the physical URI for a given ontology.
 java.util.Set<R> OWLPropertyExpression.getRanges(OWLOntology ontology)
          Gets the ranges of this property that have been asserted in the specified ontology.
 java.util.Set<OWLIndividual> OWLIndividual.getSameIndividuals(OWLOntology ontology)
          A convenience method that examines axioms in the specified ontology to determine the individuals that are asserted to be the same as this individual.
 java.util.List<OWLOntology> OWLOntologyManager.getSortedImportsClosure(OWLOntology ontology)
          Gets the topologically ordered imports closure.
 java.util.Set<OWLDescription> OWLClass.getSubClasses(OWLOntology ontology)
          Gets the classes which have been asserted to be subclasses of this class in the specified ontology.
 java.util.Set<P> OWLPropertyExpression.getSubProperties(OWLOntology ontology)
          Gets the asserted/told sub properties by examining the axioms in the specified ontology.
 java.util.Set<OWLDescription> OWLClass.getSuperClasses(OWLOntology ontology)
          A convenience method that examines the axioms in the specified ontology and return the descriptions corresponding to super classes of this class.
 java.util.Set<P> OWLPropertyExpression.getSuperProperties(OWLOntology ontology)
          Gets the asserted/told super properties by examining the axioms in the specified ontology.
 java.util.Set<OWLDescription> OWLIndividual.getTypes(OWLOntology ontology)
          A convenience method, which gets the types of this individual, that correspond to the types asserted with axioms in the specified ontology.
 boolean OWLObjectPropertyExpression.isAntiSymmetric(OWLOntology ontology)
          Deprecated. use isAsymmetric instead.
 boolean OWLObjectPropertyExpression.isAsymmetric(OWLOntology ontology)
           
 boolean OWLClass.isDefined(OWLOntology ontology)
          Determines if this class has at least one equivalent class in the specified ontology.
 boolean OWLPropertyExpression.isFunctional(OWLOntology ontology)
          Determines if this property is functional in the specified ontology
 boolean OWLObjectPropertyExpression.isInverseFunctional(OWLOntology ontology)
          Determines if the specified ontology specifies that this property is inverse functional.
 boolean OWLObjectPropertyExpression.isIrreflexive(OWLOntology ontology)
           
 boolean OWLObjectPropertyExpression.isReflexive(OWLOntology ontology)
           
 boolean OWLObjectPropertyExpression.isSymmetric(OWLOntology ontology)
           
 boolean OWLObjectPropertyExpression.isTransitive(OWLOntology ontology)
           
 void OWLOntologyFactory.OWLOntologyCreationHandler.ontologyCreated(OWLOntology ontology)
          The factory calls this method as soon as it has created an ontology.
 void OWLOntologyManager.saveOntology(OWLOntology ontology)
          Saves the specified ontology.
 void OWLOntologyManager.saveOntology(OWLOntology ontology, OWLOntologyFormat ontologyFormat)
           
 void OWLOntologyManager.saveOntology(OWLOntology ontology, OWLOntologyFormat ontologyFormat, OWLOntologyOutputTarget outputTarget)
           
 void OWLOntologyManager.saveOntology(OWLOntology ontology, OWLOntologyFormat ontologyFormat, java.net.URI physcialURI)
           
 void OWLOntologyManager.saveOntology(OWLOntology ontology, OWLOntologyOutputTarget outputTarget)
           
 void OWLOntologyManager.saveOntology(OWLOntology ontology, java.net.URI physicalURI)
          Saves the specified ontology, using the specified URI to determine where/how the ontology should be saved.
 void OWLOntologyManager.setOntologyFormat(OWLOntology ontology, OWLOntologyFormat ontologyFormat)
          Sets the format for the specified ontology.
 void OWLOntologyFactory.OWLOntologyCreationHandler.setOntologyFormat(OWLOntology ontology, OWLOntologyFormat format)
           
 void OWLOntologyManager.setPhysicalURIForOntology(OWLOntology ontology, java.net.URI physicalURI)
          Overrides the current physical URI for a given ontology.
 void OWLOntologyStorer.storeOntology(OWLOntologyManager manager, OWLOntology ontology, OWLOntologyOutputTarget target, OWLOntologyFormat format)
          Stores an ontology to the specified target.
 void OWLOntologyStorer.storeOntology(OWLOntologyManager manager, OWLOntology ontology, java.net.URI physicalURI, OWLOntologyFormat ontologyFormat)
          Stores an ontology at the specified physical URI in the specified format.
 void OWLObjectVisitor.visit(OWLOntology ontology)
           
 O OWLNamedObjectVisitorEx.visit(OWLOntology ontology)
           
 void OWLNamedObjectVisitor.visit(OWLOntology ontology)
           
 

Method parameters in org.semanticweb.owl.model with type arguments of type OWLOntology
 OWLOntology OWLOntologyManager.createOntology(java.net.URI ontologyURI, java.util.Set<OWLOntology> ontologies)
          Creates a new ontology that has the specified ontology URI and is initialised to contain the axioms that are contained in the specified ontologies.
 OWLOntology OWLOntologyManager.createOntology(java.net.URI ontologyURI, java.util.Set<OWLOntology> ontologies, boolean copyLogicalAxiomsOnly)
          Creates a new ontology that has the specified ontology URI and is initialised to contain the axioms that are contained in the specified ontologies.
 java.util.Set<OWLDescription> OWLClass.getDisjointClasses(java.util.Set<OWLOntology> ontologies)
          Gets the classes which have been asserted to be disjoint with this class by axioms in the specified ontologies.
 java.util.Set<P> OWLPropertyExpression.getDisjointProperties(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<OWLDescription> OWLPropertyExpression.getDomains(java.util.Set<OWLOntology> ontologies)
          Gets the asserted domains of this property by examining the axioms in the specified ontologies.
 java.util.Set<OWLDescription> OWLClass.getEquivalentClasses(java.util.Set<OWLOntology> ontologies)
          A convenience method that examines the axioms in the specified ontologies and returns the descriptions corresponding to equivalent classes of this class.
 java.util.Set<P> OWLPropertyExpression.getEquivalentProperties(java.util.Set<OWLOntology> ontologies)
          Gets the asserted equivalent properties by examining the axioms in the specified ontologies.
 java.util.Set<OWLIndividual> OWLClass.getIndividuals(java.util.Set<OWLOntology> ontologies)
          Gets the individuals that have been asserted to be an instance of this class by axioms in the speficied ontologies.
 java.util.Set<OWLObjectPropertyExpression> OWLObjectPropertyExpression.getInverses(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<R> OWLPropertyExpression.getRanges(java.util.Set<OWLOntology> ontologies)
          Gets the asserted ranges of this property by examining the axioms in the specified ontologies.
 java.util.Set<OWLDescription> OWLClass.getSubClasses(java.util.Set<OWLOntology> ontologies)
          Gets the classes which have been asserted to be subclasses of this class in the specified ontologies.
 java.util.Set<P> OWLPropertyExpression.getSubProperties(java.util.Set<OWLOntology> ontologies)
          Gets the asserted sub properties by examining the axioms in the specified ontologies.
 java.util.Set<OWLDescription> OWLClass.getSuperClasses(java.util.Set<OWLOntology> ontologies)
          A convenience method that examines the axioms in the specified ontologies and returns the description corresponding to the asserted super classes of this class.
 java.util.Set<P> OWLPropertyExpression.getSuperProperties(java.util.Set<OWLOntology> ontologies)
          Gets the asserted super properties by examining the axioms in the specified set of ontologies.
 java.util.Set<OWLDescription> OWLIndividual.getTypes(java.util.Set<OWLOntology> ontologies)
          A convenience method that gets the types of this individual by examining the specified ontologies.
 boolean OWLObjectPropertyExpression.isAntiSymmetric(java.util.Set<OWLOntology> ontologies)
          Deprecated. use isAsymmetric instead.
 boolean OWLObjectPropertyExpression.isAsymmetric(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLClass.isDefined(java.util.Set<OWLOntology> ontologies)
          Determines if this class has at least one equvialent class specified by an equvialent classes axiom in one of the ontologies.
 boolean OWLPropertyExpression.isFunctional(java.util.Set<OWLOntology> ontologies)
          Determines if the property is functional because there is an axiom in one of the specified ontologies that assert this to be the case.
 boolean OWLObjectPropertyExpression.isInverseFunctional(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLObjectPropertyExpression.isIrreflexive(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLObjectPropertyExpression.isReflexive(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLObjectPropertyExpression.isSymmetric(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLObjectPropertyExpression.isTransitive(java.util.Set<OWLOntology> ontologies)
           
 

Constructors in org.semanticweb.owl.model with parameters of type OWLOntology
AddAxiom(OWLOntology ont, OWLAxiom axiom)
           
OWLAxiomChange(OWLOntology ont, OWLAxiom axiom)
           
OWLOntologyChange(OWLOntology ont)
           
RemoveAxiom(OWLOntology ont, OWLAxiom axiom)
           
SetOntologyURI(OWLOntology ont, java.net.URI newURI)
          Creates a set ontology URI change, which will set the URI of the ontology to the specified new URI.
SpecificOntologyChangeBroadcastStrategy(OWLOntology ontology)
          Constructs a change broadcast strategy which only causes changes that have been applied to the specific ontology to be broadcast.
 

Uses of OWLOntology in org.semanticweb.owl.modularity
 

Methods in org.semanticweb.owl.modularity that return OWLOntology
 OWLOntology OntologySegmenter.extractAsOntology(java.util.Set<OWLEntity> signature, java.net.URI uri)
          Returns an ontology that is a segment of the ontology associated with this segmenter.
 

Uses of OWLOntology in org.semanticweb.owl.profiles
 

Methods in org.semanticweb.owl.profiles with parameters of type OWLOntology
 OWLProfileReport OWLProfile.checkOntology(OWLOntology ontology, OWLOntologyManager manager)
          Checks an ontology and its import closure to see if it is within this profile.
 OWLProfileReport OWLDLProfile.checkOntology(OWLOntology ontology, OWLOntologyManager manager)
           
 OWLProfileReport OWL2Profile.checkOntology(OWLOntology ontology, OWLOntologyManager manager)
           
 OWLProfileReport ELPlusPlusProfile.checkOntology(OWLOntology ontology, OWLOntologyManager manager)
           
 

Uses of OWLOntology in org.semanticweb.owl.util
 

Methods in org.semanticweb.owl.util that return OWLOntology
 OWLOntology OWLOntologyMerger.createMergedOntology(OWLOntologyManager ontologyManager, java.net.URI ontologyURI)
           
 

Methods in org.semanticweb.owl.util that return types with arguments of type OWLOntology
 java.util.Set<OWLOntology> ToldClassHierarchyReasoner.getLoadedOntologies()
           
 java.util.Set<OWLOntology> OWLReasonerMediator.getLoadedOntologies()
           
 java.util.Map<OWLOntology,java.util.Set<O>> ImportsStructureObjectSorter.getObjects()
          Gets a map that maps ontologies to sets of associated objects.
 java.util.Set<OWLOntology> OWLOntologySingletonSetProvider.getOntologies()
           
 java.util.Set<OWLOntology> OWLOntologyImportsClosureSetProvider.getOntologies()
           
 

Methods in org.semanticweb.owl.util with parameters of type OWLOntology
 void InferredOntologyGenerator.fillOntology(OWLOntologyManager manager, OWLOntology ontology)
          Adds 'inferred axioms' to an ontology using the generators that have been registered with this InferredAxiomGenerator
 java.util.List<OWLOntologyChange> OWLOntologyURIChanger.getChanges(OWLOntology ontology, java.net.URI newURI)
          Changes the URI of the specified ontology to the new URI.
 java.util.Set<O> ImportsStructureObjectSorter.ObjectSelector.getObjects(OWLOntology ontology)
           
 java.util.Set<OWLEntity> ImportsStructureEntitySorter.ReferencedEntitySelector.getObjects(OWLOntology ontology)
           
 boolean OWLReasonerMediator.isConsistent(OWLOntology ontology)
           
 void OWLObjectPropertyManager.setOntology(OWLOntology ontology)
           
 void AbstractOWLOntologyStorer.storeOntology(OWLOntologyManager manager, OWLOntology ontology, OWLOntologyOutputTarget target, OWLOntologyFormat format)
           
 void AbstractOWLOntologyStorer.storeOntology(OWLOntologyManager manager, OWLOntology ontology, java.net.URI physicalURI, OWLOntologyFormat ontologyFormat)
           
 void SimpleRenderer.visit(OWLOntology ontology)
           
 O OWLObjectVisitorExAdapter.visit(OWLOntology ontology)
           
 void OWLObjectVisitorAdapter.visit(OWLOntology ontology)
           
 void OWLObjectTypeIndexProvider.visit(OWLOntology ontology)
           
 void OWLObjectDuplicator.visit(OWLOntology ontology)
           
 void OWLObjectComponentCollector.visit(OWLOntology ontology)
           
 void OWLEntityCollector.visit(OWLOntology ontology)
           
 void HashCode.visit(OWLOntology ontology)
           
 void DLExpressivityChecker.visit(OWLOntology ontology)
           
 O DelegatingObjectVisitorEx.visit(OWLOntology ontology)
           
 

Method parameters in org.semanticweb.owl.util with type arguments of type OWLOntology
static java.util.Collection<java.util.Set<OWLObjectPropertyExpression>> OWLObjectPropertyManager.getEquivalentObjectProperties(java.util.Set<OWLOntology> ontologies)
           
 void ToldClassHierarchyReasoner.loadOntologies(java.util.Set<OWLOntology> ontologies)
           
 void OWLReasonerMediator.loadOntologies(java.util.Set<OWLOntology> ontologies)
           
static void OWLObjectPropertyManager.tarjan(java.util.Set<OWLOntology> ontologies, OWLObjectPropertyExpression prop, int index, java.util.Stack<OWLObjectPropertyExpression> stack, java.util.Map<OWLObjectPropertyExpression,java.lang.Integer> indexMap, java.util.Map<OWLObjectPropertyExpression,java.lang.Integer> lowlinkMap, java.util.Set<java.util.Set<OWLObjectPropertyExpression>> result, java.util.Set<OWLObjectPropertyExpression> processed, java.util.Set<OWLObjectPropertyExpression> stackProps)
           
 void ToldClassHierarchyReasoner.unloadOntologies(java.util.Set<OWLOntology> ontologies)
           
 void OWLReasonerMediator.unloadOntologies(java.util.Set<OWLOntology> ontologies)
           
 

Constructors in org.semanticweb.owl.util with parameters of type OWLOntology
ImportsStructureEntitySorter(OWLOntology ontology, OWLOntologyManager manager)
           
ImportsStructureObjectSorter(OWLOntology ontology, OWLOntologyManager manager, ImportsStructureObjectSorter.ObjectSelector<O> objectSelector)
          Creates a sorter for the specified ontology, whose imports closure is obtained with the specified manager, and for each ontology whose objects are selected using the specified object selector.
OWLObjectPropertyManager(OWLOntologyManager manager, OWLOntology ont)
           
OWLOntologyImportsClosureSetProvider(OWLOntologyManager manager, OWLOntology rootOntology)
          Constructs an OWLOntologySetProvider which provides a set containing the imports closure of a given ontology.
OWLOntologySingletonSetProvider(OWLOntology ontology)
          Constructs an OWLOntologySingletonSetProvider which provides a singleton set contain the specified ontology.
ShortForm2AnnotationGenerator(OWLOntologyManager ontologyManager, OWLOntology ontology, ShortFormProvider shortFormProvider, java.net.URI annotationURI)
           
ShortForm2AnnotationGenerator(OWLOntologyManager ontologyManager, OWLOntology ontology, ShortFormProvider shortFormProvider, java.net.URI annotationURI, java.lang.String languageTag)
           
 

Constructor parameters in org.semanticweb.owl.util with type arguments of type OWLOntology
BidirectionalShortFormProviderAdapter(OWLOntologyManager man, java.util.Set<OWLOntology> ontologies, ShortFormProvider shortFormProvider)
          Creates a BidirectionalShortFormProvider that maps between the entities that are referenced in the specified ontologies and the shortforms of these entities.
BidirectionalShortFormProviderAdapter(java.util.Set<OWLOntology> ontologies, ShortFormProvider shortFormProvider)
          Creates a BidirectionalShortFormProvider that maps between the entities that are referenced in the specified ontologies and the shortforms of these entities.
DLExpressivityChecker(java.util.Set<OWLOntology> ontologies)
           
OWLEntityRemover(OWLOntologyManager owlOntologyManager, java.util.Set<OWLOntology> ontologies)
          Creates an entity remover, which will remove entities (axioms referring to the entities from the specified ontologies).
OWLEntityRenamer(OWLOntologyManager owlOntologyManager, java.util.Set<OWLOntology> ontologies)
           
OWLEntityURIConverter(OWLOntologyManager manager, java.util.Set<OWLOntology> ontologies, OWLEntityURIConverterStrategy strategy)
          Creates a converter that will convert the URIs of entities in the specified ontologies using the specified conversion strategy.
OWLOntologyWalker(java.util.Set<OWLOntology> objects)
           
ReferencedEntitySetProvider(java.util.Set<OWLOntology> ontologies)
           
SimpleRootClassChecker(java.util.Set<OWLOntology> ontologies)
          Creates a root class checker, which examines axioms contained in ontologies from the specified set in order to determine if a class is a syntactic subclass of owl:Thing
 

Uses of OWLOntology in uk.ac.manchester.cs.owl
 

Classes in uk.ac.manchester.cs.owl that implement OWLOntology
 class OWLOntologyImpl
          Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 26-Oct-2006

 

Methods in uk.ac.manchester.cs.owl that return OWLOntology
 OWLOntology OWLOntologyManagerImpl.createOntology(java.util.Set<OWLAxiom> axioms)
           
 OWLOntology OWLOntologyManagerImpl.createOntology(java.util.Set<OWLAxiom> axioms, java.net.URI ontologyURI)
           
 OWLOntology OWLOntologyManagerImpl.createOntology(java.net.URI ontologyURI)
           
 OWLOntology OWLOntologyManagerImpl.createOntology(java.net.URI ontologyURI, java.util.Set<OWLOntology> ontologies)
           
 OWLOntology OWLOntologyManagerImpl.createOntology(java.net.URI ontologyURI, java.util.Set<OWLOntology> ontologies, boolean copyLogicalAxiomsOnly)
           
 OWLOntology ParsableOWLOntologyFactory.createOWLOntology(java.net.URI ontologyURI, java.net.URI physicalURI)
          Overriden - This method will throw an OWLException which wraps an UnsupportedOperationException.
 OWLOntology EmptyInMemOWLOntologyFactory.createOWLOntology(java.net.URI ontologyURI, java.net.URI physicalURI, OWLOntologyFactory.OWLOntologyCreationHandler handler)
           
 OWLOntology AbstractInMemOWLOntologyFactory.createOWLOntology(java.net.URI ontologyURI, java.net.URI physicalURI, OWLOntologyFactory.OWLOntologyCreationHandler handler)
          Creates an empty ontology that a concrete representation can be parsed into.
 OWLOntology OWLOntologyManagerImpl.getImportedOntology(OWLImportsDeclaration declaration)
           
 OWLOntology OWLOntologyManagerImpl.getOntology(java.net.URI ontologyURI)
           
 OWLOntology OWLImportsDeclarationImpl.getSubject()
           
 OWLOntology OWLOntologyManagerImpl.loadOntology(OWLOntologyInputSource inputSource)
           
 OWLOntology OWLOntologyManagerImpl.loadOntology(java.net.URI ontologyURI)
           
 OWLOntology OWLOntologyManagerImpl.loadOntologyFromPhysicalURI(java.net.URI uri)
           
 OWLOntology ParsableOWLOntologyFactory.loadOWLOntology(OWLOntologyInputSource inputSource, OWLOntologyFactory.OWLOntologyCreationHandler mediator)
           
 OWLOntology EmptyInMemOWLOntologyFactory.loadOWLOntology(OWLOntologyInputSource inputSource, OWLOntologyFactory.OWLOntologyCreationHandler mediator)
           
 OWLOntology OWLOntologyManagerImpl.reloadOntology(java.net.URI ontologyURI)
           
 

Methods in uk.ac.manchester.cs.owl that return types with arguments of type OWLOntology
 java.util.Set<OWLOntology> OWLOntologyManagerImpl.getImports(OWLOntology ontology)
           
 java.util.Set<OWLOntology> OWLOntologyImpl.getImports(OWLOntologyManager ontologyManager)
           
 java.util.Set<OWLOntology> OWLOntologyManagerImpl.getImportsClosure(OWLOntology ontology)
           
 java.util.Set<OWLOntology> OWLOntologyManagerImpl.getOntologies()
           
 java.util.Set<OWLOntology> OWLOntologyManagerImpl.getOntologies(OWLAxiom axiom)
           
 java.util.List<OWLOntology> OWLOntologyManagerImpl.getSortedImportsClosure(OWLOntology ontology)
           
 

Methods in uk.ac.manchester.cs.owl with parameters of type OWLOntology
 java.util.List<OWLOntologyChange> OWLOntologyManagerImpl.addAxiom(OWLOntology ont, OWLAxiom axiom)
           
 java.util.List<OWLOntologyChange> OWLOntologyManagerImpl.addAxioms(OWLOntology ont, java.util.Set<? extends OWLAxiom> axioms)
           
 boolean OWLOntologyManagerImpl.contains(OWLOntology ontology)
           
 java.util.Set<OWLAnnotationAxiom> OWLObjectPropertyImpl.getAnnotationAxioms(OWLOntology ontology)
           
 java.util.Set<OWLAnnotationAxiom> OWLIndividualImpl.getAnnotationAxioms(OWLOntology ontology)
           
 java.util.Set<OWLAnnotationAxiom> OWLDataTypeImpl.getAnnotationAxioms(OWLOntology ontology)
           
 java.util.Set<OWLAnnotationAxiom> OWLDataPropertyImpl.getAnnotationAxioms(OWLOntology ontology)
           
 java.util.Set<OWLAnnotationAxiom> OWLClassImpl.getAnnotationAxioms(OWLOntology ontology)
           
 java.util.Set<OWLAxiomAnnotationAxiom> OWLAxiomImpl.getAnnotationAxioms(OWLOntology ontology)
           
 java.util.Set<OWLOntologyAnnotationAxiom> OWLOntologyImpl.getAnnotations(OWLOntology ontology)
          Gets the annotations whose subject is this ontology - i.e.
 java.util.Set<OWLAnnotation> OWLObjectPropertyImpl.getAnnotations(OWLOntology ontology)
           
 java.util.Set<OWLAnnotation> OWLIndividualImpl.getAnnotations(OWLOntology ontology)
           
 java.util.Set<OWLAnnotation> OWLDataTypeImpl.getAnnotations(OWLOntology ontology)
           
 java.util.Set<OWLAnnotation> OWLDataPropertyImpl.getAnnotations(OWLOntology ontology)
           
 java.util.Set<OWLAnnotation> OWLClassImpl.getAnnotations(OWLOntology ontology)
           
 java.util.Set<OWLAnnotation> OWLObjectPropertyImpl.getAnnotations(OWLOntology ontology, java.net.URI annotationURI)
           
 java.util.Set<OWLAnnotation> OWLIndividualImpl.getAnnotations(OWLOntology ontology, java.net.URI annotationURI)
           
 java.util.Set<OWLAnnotation> OWLDataTypeImpl.getAnnotations(OWLOntology ontology, java.net.URI annotationURI)
           
 java.util.Set<OWLAnnotation> OWLDataPropertyImpl.getAnnotations(OWLOntology ontology, java.net.URI annotationURI)
           
 java.util.Set<OWLAnnotation> OWLClassImpl.getAnnotations(OWLOntology ontology, java.net.URI annotationURI)
           
 java.util.Map<OWLDataPropertyExpression,java.util.Set<OWLConstant>> OWLIndividualImpl.getDataPropertyValues(OWLOntology ontology)
           
 java.util.Set<OWLIndividual> OWLIndividualImpl.getDifferentIndividuals(OWLOntology ontology)
           
 java.util.Set<OWLDescription> OWLClassImpl.getDisjointClasses(OWLOntology ontology)
           
 java.util.Set<OWLDisjointClassesAxiom> OWLClassImpl.getDisjointClassesAxioms(OWLOntology ontology)
           
 java.util.Set<P> OWLPropertyExpressionImpl.getDisjointProperties(OWLOntology ontology)
           
 java.util.Set<OWLDisjointUnionAxiom> OWLClassImpl.getDisjointUnionAxioms(OWLOntology ontology)
           
 java.util.Set<OWLDescription> OWLPropertyExpressionImpl.getDomains(OWLOntology ontology)
           
 java.util.Set<OWLEntityAnnotationAxiom> OWLDeclarationAxiomImpl.getEntityAnnotations(OWLOntology ontology)
           
 java.util.Set<OWLDescription> OWLClassImpl.getEquivalentClasses(OWLOntology ontology)
           
 java.util.Set<OWLEquivalentClassesAxiom> OWLClassImpl.getEquivalentClassesAxioms(OWLOntology ontology)
           
 java.util.Set<P> OWLPropertyExpressionImpl.getEquivalentProperties(OWLOntology ontology)
           
 java.util.Set<OWLOntology> OWLOntologyManagerImpl.getImports(OWLOntology ontology)
           
 java.util.Set<OWLOntology> OWLOntologyManagerImpl.getImportsClosure(OWLOntology ontology)
           
 java.util.Set<OWLDataPropertyAssertionAxiom> OWLIndividualImpl.getIndividualDataRelationshipAxioms(OWLOntology ontology)
           
 java.util.Set<OWLNegativeDataPropertyAssertionAxiom> OWLIndividualImpl.getIndividualNotDataRelationshipAxioms(OWLOntology ontology)
           
 java.util.Set<OWLNegativeObjectPropertyAssertionAxiom> OWLIndividualImpl.getIndividualNotObjectRelationshipAxioms(OWLOntology ontology)
           
 java.util.Set<OWLObjectPropertyAssertionAxiom> OWLIndividualImpl.getIndividualObjectRelationshipAxioms(OWLOntology ontology)
           
 java.util.Set<OWLIndividual> OWLClassImpl.getIndividuals(OWLOntology ontology)
           
 java.util.Set<OWLClassAssertionAxiom> OWLIndividualImpl.getIndividualTypeAxioms(OWLOntology ontology)
           
 java.util.Set<OWLObjectPropertyExpression> OWLObjectPropertyExpressionImpl.getInverses(OWLOntology ontology)
           
 java.util.Map<OWLDataPropertyExpression,java.util.Set<OWLConstant>> OWLIndividualImpl.getNegativeDataPropertyValues(OWLOntology ontology)
           
 java.util.Map<OWLObjectPropertyExpression,java.util.Set<OWLIndividual>> OWLIndividualImpl.getNegativeObjectPropertyValues(OWLOntology ontology)
           
 java.util.Map<OWLProperty,java.util.Set<OWLObject>> OWLIndividualImpl.getNPropertyValues(OWLOntology ontology)
           
 java.util.Map<OWLObjectPropertyExpression,java.util.Set<OWLIndividual>> OWLIndividualImpl.getObjectPropertyValues(OWLOntology ontology)
           
 OWLOntologyFormat OWLOntologyManagerImpl.getOntologyFormat(OWLOntology ontology)
           
 OWLImportsDeclaration OWLDataFactoryImpl.getOWLImportsDeclarationAxiom(OWLOntology subject, java.net.URI importedOntologyURI)
           
 OWLOntologyAnnotationAxiom OWLDataFactoryImpl.getOWLOntologyAnnotationAxiom(OWLOntology subject, OWLAnnotation annotation)
           
 java.net.URI OWLOntologyManagerImpl.getPhysicalURIForOntology(OWLOntology ontology)
           
 java.util.Map<OWLProperty,java.util.Set<OWLObject>> OWLIndividualImpl.getPropertyValues(OWLOntology ontology)
           
 java.util.Set<R> OWLPropertyExpressionImpl.getRanges(OWLOntology ontology)
           
 java.util.Set<OWLIndividual> OWLIndividualImpl.getSameIndividuals(OWLOntology ontology)
           
 java.util.List<OWLOntology> OWLOntologyManagerImpl.getSortedImportsClosure(OWLOntology ontology)
           
 java.util.Set<OWLSubClassAxiom> OWLClassImpl.getSubClassAxioms(OWLOntology ontology)
           
 java.util.Set<OWLDescription> OWLClassImpl.getSubClasses(OWLOntology ontology)
           
 java.util.Set<P> OWLPropertyExpressionImpl.getSubProperties(OWLOntology ontology)
           
 java.util.Set<OWLDescription> OWLClassImpl.getSuperClasses(OWLOntology ontology)
           
 java.util.Set<P> OWLPropertyExpressionImpl.getSuperProperties(OWLOntology ontology)
           
 java.util.Set<OWLDescription> OWLIndividualImpl.getTypes(OWLOntology ontology)
           
 boolean OWLObjectPropertyExpressionImpl.isAntiSymmetric(OWLOntology ontology)
           
 boolean OWLObjectPropertyExpressionImpl.isAsymmetric(OWLOntology ontology)
           
 boolean OWLClassImpl.isDefined(OWLOntology ontology)
          Determines if this class has at least one equivalent class in the specified ontology.
 boolean OWLObjectPropertyExpressionImpl.isFunctional(OWLOntology ontology)
           
 boolean OWLDataPropertyImpl.isFunctional(OWLOntology ontology)
           
 boolean OWLObjectPropertyExpressionImpl.isInverseFunctional(OWLOntology ontology)
           
 boolean OWLObjectPropertyExpressionImpl.isIrreflexive(OWLOntology ontology)
           
 boolean OWLObjectPropertyExpressionImpl.isReflexive(OWLOntology ontology)
           
 boolean OWLObjectPropertyExpressionImpl.isSymmetric(OWLOntology ontology)
           
 boolean OWLObjectPropertyExpressionImpl.isTransitive(OWLOntology ontology)
           
 void OWLOntologyManagerImpl.ontologyCreated(OWLOntology ontology)
           
 void OWLOntologyManagerImpl.saveOntology(OWLOntology ontology)
           
 void OWLOntologyManagerImpl.saveOntology(OWLOntology ontology, OWLOntologyFormat ontologyFormat)
           
 void OWLOntologyManagerImpl.saveOntology(OWLOntology ontology, OWLOntologyFormat ontologyFormat, OWLOntologyOutputTarget outputTarget)
           
 void OWLOntologyManagerImpl.saveOntology(OWLOntology ontology, OWLOntologyFormat ontologyFormat, java.net.URI physcialURI)
           
 void OWLOntologyManagerImpl.saveOntology(OWLOntology ontology, OWLOntologyOutputTarget outputTarget)
           
 void OWLOntologyManagerImpl.saveOntology(OWLOntology ontology, java.net.URI physicalURI)
           
 void OWLOntologyManagerImpl.setOntologyFormat(OWLOntology ontology, OWLOntologyFormat format)
           
 void OWLOntologyManagerImpl.setPhysicalURIForOntology(OWLOntology ontology, java.net.URI physicalURI)
           
 

Method parameters in uk.ac.manchester.cs.owl with type arguments of type OWLOntology
 OWLOntology OWLOntologyManagerImpl.createOntology(java.net.URI ontologyURI, java.util.Set<OWLOntology> ontologies)
           
 OWLOntology OWLOntologyManagerImpl.createOntology(java.net.URI ontologyURI, java.util.Set<OWLOntology> ontologies, boolean copyLogicalAxiomsOnly)
           
static java.util.Set<OWLAnnotationAxiom> ImplUtils.getAnnotationAxioms(OWLEntity entity, java.util.Set<OWLOntology> ontologies)
           
static java.util.Set<OWLAnnotation> ImplUtils.getAnnotations(OWLEntity entity, java.util.Set<OWLOntology> ontologies)
           
static java.util.Set<OWLAnnotation> ImplUtils.getAnnotations(OWLEntity entity, java.net.URI annotationURI, java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<OWLDescription> OWLClassImpl.getDisjointClasses(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<P> OWLPropertyExpressionImpl.getDisjointProperties(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<OWLDescription> OWLPropertyExpressionImpl.getDomains(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<OWLDescription> OWLClassImpl.getEquivalentClasses(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<P> OWLPropertyExpressionImpl.getEquivalentProperties(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<OWLIndividual> OWLClassImpl.getIndividuals(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<OWLObjectPropertyExpression> OWLObjectPropertyExpressionImpl.getInverses(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<R> OWLPropertyExpressionImpl.getRanges(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<OWLDescription> OWLClassImpl.getSubClasses(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<P> OWLPropertyExpressionImpl.getSubProperties(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<OWLDescription> OWLClassImpl.getSuperClasses(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<P> OWLPropertyExpressionImpl.getSuperProperties(java.util.Set<OWLOntology> ontologies)
           
 java.util.Set<OWLDescription> OWLIndividualImpl.getTypes(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLObjectPropertyExpressionImpl.isAntiSymmetric(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLObjectPropertyExpressionImpl.isAsymmetric(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLClassImpl.isDefined(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLObjectPropertyExpressionImpl.isFunctional(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLDataPropertyImpl.isFunctional(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLObjectPropertyExpressionImpl.isInverseFunctional(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLObjectPropertyExpressionImpl.isIrreflexive(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLObjectPropertyExpressionImpl.isReflexive(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLObjectPropertyExpressionImpl.isSymmetric(java.util.Set<OWLOntology> ontologies)
           
 boolean OWLObjectPropertyExpressionImpl.isTransitive(java.util.Set<OWLOntology> ontologies)
           
 

Constructors in uk.ac.manchester.cs.owl with parameters of type OWLOntology
OWLImportsDeclarationImpl(OWLDataFactory dataFactory, OWLOntology subject, java.net.URI importsURI)
           
OWLOntologyAnnotationAxiomImpl(OWLDataFactory dataFactory, OWLOntology subject, OWLAnnotation annotation)
           
 

Uses of OWLOntology in uk.ac.manchester.cs.owl.dlsyntax
 

Methods in uk.ac.manchester.cs.owl.dlsyntax with parameters of type OWLOntology
 void DLSyntaxObjectRenderer.visit(OWLOntology ontology)
           
 

Uses of OWLOntology in uk.ac.manchester.cs.owl.inference.dig11
 

Methods in uk.ac.manchester.cs.owl.inference.dig11 with parameters of type OWLOntology
 boolean DIGReasoner.isConsistent(OWLOntology ontology)
           
 void DIGRenderer.visit(OWLOntology ontology)
           
 

Method parameters in uk.ac.manchester.cs.owl.inference.dig11 with type arguments of type OWLOntology
 void DIGTranslatorImpl.translateToDIG(java.util.Set<OWLOntology> ontologies, org.w3c.dom.Document doc, org.w3c.dom.Element node)
           
 void DIGTranslator.translateToDIG(java.util.Set<OWLOntology> ontologies, org.w3c.dom.Document doc, org.w3c.dom.Element node)
          Translates a set of OWLOntology objects to DIG
 

Uses of OWLOntology in uk.ac.manchester.cs.owl.mansyntaxrenderer
 

Methods in uk.ac.manchester.cs.owl.mansyntaxrenderer with parameters of type OWLOntology
 void ManchesterOWLSyntaxRenderer.render(OWLOntology ontology, java.io.Writer writer)
           
 void ManchesterOWLSyntaxObjectRenderer.visit(OWLOntology ontology)
           
 

Constructors in uk.ac.manchester.cs.owl.mansyntaxrenderer with parameters of type OWLOntology
ManchesterOWLSyntaxFrameRenderer(OWLOntologyManager owlOntologyManager, OWLOntology ontology, java.io.Writer writer)
           
 

Uses of OWLOntology in uk.ac.manchester.cs.owl.modularity
 

Methods in uk.ac.manchester.cs.owl.modularity that return OWLOntology
 OWLOntology SyntacticLocalityModuleExtractor.extractAsOntology(java.util.Set<OWLEntity> signature, java.net.URI uri)
          Extracts a module from the associated ontology for a given signature and the associated module type, and returns the module as an ontology.
 

Constructors in uk.ac.manchester.cs.owl.modularity with parameters of type OWLOntology
SyntacticLocalityModuleExtractor(OWLOntologyManager man, OWLOntology ont, ModuleType moduleType)
          Creates a new module extractor for a given ontology, its manager, and a specified type of locality.
 

Uses of OWLOntology in uk.ac.manchester.cs.owl.turtle.parser
 

Methods in uk.ac.manchester.cs.owl.turtle.parser with parameters of type OWLOntology
 OWLOntologyFormat TurtleOntologyParser.parse(OWLOntologyInputSource inputSource, OWLOntology ontology)
           
 

Constructors in uk.ac.manchester.cs.owl.turtle.parser with parameters of type OWLOntology
OWLRDFConsumerAdapter(OWLOntologyManager owlOntologyManager, OWLOntology ontology, AnonymousNodeChecker checker)