Yuan He : Publications

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@article{chen2024ontology,
  title = "Ontology Embedding: A Survey of Methods, Applications and Resources",
  author = "Jiaoyan Chen and Olga Mashkova and Fernando Zhapa-Camacho and Robert Hoehndorf and Yuan He and Ian Horrocks",
  year = "2024",
  journal = "ArXiv Preprint",
}

@article{song2024ground,
  title = "Ground settlement prediction for open caisson shafts in sand using a neural network constrained by empiricism",
  author = "Song, Geyang and He, Yuan and Sheil, Brian and Morris, James",
  year = "2024",
  journal = "Computers and Geotechnics",
  publisher = "Elsevier",
}

@inproceedings{ding2024dyg,
  title = "DyGMamba: Efficiently Modeling Long-Term Temporal Dependency on Continuous-Time Dynamic Graphs with State Space Models",
  author = "Zifeng Ding and Yifeng Li and Yuan He and Antonio Norelli and Jingcheng Wu and Volker Tresp and Yunpu Ma and Michael Bronstein",
  year = "2024",
  booktitle = "Arxiv Preprint",
}

@inproceedings{he2024language,
  title = "Language Models as Hierarchy Encoders",
  author = "Yuan He and Zhangdie Yuan and Jiaoyan Chen and Ian Horrocks",
  year = "2024",
  booktitle = "Advances in Neural Information Processing Systems (NeurIPS 2024)",
}

@inproceedings{dong2024language,
  title = "A Language Model based Framework for New Concept Placement in Ontologies",
  author = "Hang Dong and Jiaoyan Chen and Yuan He and Yongsheng Gao and Ian Horrocks",
  year = "2024",
  booktitle = "The 21st Extended Semantic Web Conference (ESWC-2024)",
}

@inproceedings{he2024deeponto,
  title = "DeepOnto: A Python Package for Ontology Engineering with Deep Learning",
  author = "He, Yuan and Chen, Jiaoyan and Dong, Hang and Horrocks, Ian and Allocca, Carlo and Kim, Taehun and Sapkota, Brahmananda",
  year = "2024",
  booktitle = "Semantic Web Journal",
}

@phdthesis{he2024a,
  title = "Language Models for Ontology Engineering",
  author = "Yuan He",
  year = "2024",
  institution = "University of Oxford",
  doi = "10.5287/ora-pd7q5y157",
}

@inproceedings{he2023exploring,
  title = "Exploring large language models for ontology alignment",
  author = "Yuan He and Jiaoyan Chen and Hang Dong and Ian Horrocks",
  year = "2023",
  booktitle = "Posters & Demos of the 22nd International Semantic Web Conference (ISWC-2023)",
}

@inproceedings{om2023,
  title = "Results of the ontology alignment evaluation initiative 2023",
  author = "Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla J Castro, Jiaoyan Chen, Adrien Coulet, Julien Cufi, Dong Hang, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Sarika Jain, Ernesto Jimenez-Ruiz, Naouel Karam, Patrick Lambrix, Huanyu Li, Ying Li, Pierre Monnin, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Guilherme Sousa, Cassia Trojahn, Jana Vatascinova, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou",
  year = "2023",
  booktitle = "The 18th International Workshop on Ontology Matching (OM@ISWC−2023)",
}

@inproceedings{dong2023ontology,
  title = "Ontology Enrichment from Texts: A Biomedical Dataset for Concept Discovery and Placement",
  author = "Hang Dong and Jiaoyan Chen and Yuan He and Ian Horrocks",
  year = "2023",
  booktitle = "32nd ACM International Conference on Information and Knowledge Management  (CIKM-2023)",
  note = "Best Resource Paper Runner-Up",
}

@inproceedings{dong2023reveal,
  title = "Reveal the Unknown: Out-of-Knowledge-Base Mention Discovery with Entity Linking",
  author = "Hang Dong and Jiaoyan Chen and Yuan He and Yinan Liu and Ian Horrocks",
  year = "2023",
  booktitle = "32nd ACM International Conference on Information and Knowledge Management  (CIKM-2023)",
}

@inproceedings{he2023language,
  title = "Language Model Analysis for Ontology Subsumption Inferece",
  author = "Yuan He and Jiaoyan Chen and Ernesto and Jim{\'e}nez-Ruiz and Hang Dong and Ian Horrocks",
  year = "2023",
  booktitle = "Findings of the Association for Computational Linguistics: ACL 2023",
  url = "https://aclanthology.org/2023.findings-acl.213",
}

@inproceedings{Chen2023ContextualSE,
  title = "Contextual Semantic Embeddings for Ontology Subsumption Prediction",
  author = "Jiaoyan Chen and Yuan He and Ernesto Jim{\'e}nez-Ruiz and Hang Dong and Ian Horrocks",
  year = "2023",
  booktitle = "World Wide Web Journal (WWWJ-2023)",
  doi = "https://doi.org/10.1007/s11280-023-01169-9",
}

@inproceedings{Chen2021LowresourceLW,
  title = "Zero-shot and Few-shot Learning with Knowledge Graphs: A Comprehensive Survey",
  author = "Jiaoyan Chen and Yuxia Geng and Zhuo Chen and Jeff Z. Pan and Yuan He and Wen Zhang and Ian Horrocks and Huajun Chen",
  year = "2023",
  booktitle = "Proceedings of the IEEE (2023)",
}

@inproceedings{om2022,
  title = "Results of the ontology alignment evaluation initiative 2022",
  author = "Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla J Castro, Jiaoyan Chen, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Ernesto Jiménez-Ruiz, Naouel Karam, Amir Laadhar, Patrick Lambrix, Huanyu Li, Yunhai Li, Franck Michel, Engy Nasr, H Paulheim, C Pesquita, T Saveta, Pavel Shvaiko, Cassia Trojahn, Chantelle Verhey, Mingfang Wu, B Yaman, O Zamazal, L Zhou",
  year = "2022",
  booktitle = "The 17th International Workshop on Ontology Matching (OM@ISWC−2022)",
}

@inproceedings{KlingonDL4KG,
  title = "Improving Language Model Predictions via Prompts Enriched with Knowledge Graphs",
  author = "Ryan Brate and Minh-Hoang Dang and Fabian Hoppe and Yuan He and Albert Meroño-Peñuela and Vijay Sadashivaiah",
  year = "2022",
  booktitle = "Workshop on Deep Learning for Knowledge Graphs (DL4KG@ ISWC2022)",
}

@inproceedings{he2022machine,
  title = "Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching",
  author = "Yuan He and Jiaoyan Chen and Hang Dong and Ernesto Jim{\'e}nez-Ruiz and Ali Hadian and Ian Horrocks",
  year = "2022",
  booktitle = "The 21st International Semantic Web Conference (ISWC-2022)",
  note = "Best Resource Paper Candidate",
  doi = "https://doi.org/10.1007/978-3-031-19433-7_33",
}

@inproceedings{He2022BERTMapAB,
  title = "BERTMap: A BERT-based Ontology Alignment System",
  author = "Yuan He and Jiaoyan Chen and Denvar Antonyrajah and Ian Horrocks",
  year = "2022",
  booktitle = "Proceedings of 36th AAAI Conference on Artificial Intelligence 2022 (AAAI 2022)",
  doi = "10.1609/aaai.v36i5.20510",
}

@inproceedings{He2021BiomedicalOA,
  title = "Biomedical ontology alignment with BERT",
  author = "Yuan He and Jiaoyan Chen and Denvar Antonyrajah and Ian Horrocks",
  year = "2021",
  booktitle = "The 16th International Workshop on Ontology Matching (OM@ISWC-2021)",
}

@inproceedings{He2020EnglishtoChineseTW,
  title = "English-to-Chinese Transliteration with Phonetic Auxiliary Task",
  author = "Yuan He and Shay B. Cohen",
  year = "2020",
  booktitle = "Proceedings of the 1st Conference of the Asia-Pacific Chapter of the Association for Computational Linguistics and the 10th International Joint Conference on Natural Language Processing (AACL-2020)",
}