Chaste: Publications

Click here to download all publications in a single bibtex file

@article{cooper2015cce,
  title = "Cellular cardiac electrophysiology modelling with Chaste and CellML",
  author = "Jonathan Cooper and Raymond Spiteri and Gary Mirams",
  year = "2015",
  journal = "Frontiers in Physiology",
  month = "January",
  pages = "511",
  url = "http://journal.frontiersin.org/Journal/10.3389/fphys.2014.00511",
  volume = "5",
  doi = "10.3389/fphys.2014.00511",
}

@article{Chaste2,
  title = "Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library",
  author = "Bernabeu, M.O. and Bordas, R. and Pathmanathan, P. and Pitt-Francis, J. and Cooper, J. and Garny, A. and Gavaghan, D.J. and Rodriguez, B. and Southern, J.A. and Whiteley, J.P.",
  year = "2009",
  journal = "Phil Trans Roy Soc (A)",
  month = "May",
  number = "1895",
  pages = "1907-1930",
  volume = "367",
  doi = "10.1098/rsta.2008.0309",
}

@article{ChasteCPC09,
  title = "Chaste: a test-driven approach to software development for biological modelling",
  author = "Pitt-Francis, Joe and Pathmanathan, Pras and Bernabeu, Miguel O and Bordas, Rafel and Cooper, Jonathan and Fletcher, Alexander G and Mirams, Gary R and Murray, Philip and Osborne, James M and Walter, Alex and others",
  year = "2009",
  journal = "Computer Physics Communications",
  number = "12",
  pages = "2452--2471",
  publisher = "North-Holland",
  volume = "180",
  doi = "10.1016/j.cpc.2009.07.019",
}

@article{chaste_dtm,
  title = "A computational study of discrete mechanical tissue models",
  author = "P Pathmanathan and J Cooper and A Fletcher and G Mirams and P Murray and J Osborne and J Pitt-Francis and A Walter and S J Chapman",
  year = "2009",
  journal = "Physical Biology",
  number = "3",
  volume = "6",
  doi = "10.1088/1478-3975/6/3/036001",
}

@article{cancerchaste1,
  title = "An integrative computational model for intestinal tissue renewal",
  author = "Van Leeuwen and Ingeborg MM and Mirams, GR and Walter, Alex and Fletcher, A and Murray, P and Osborne, J and Varma, S and Young, SJ and Cooper, J and Doyle, B and others",
  year = "2009",
  journal = "Cell proliferation",
  number = "5",
  pages = "617--636",
  publisher = "Blackwell Publishing Ltd Oxford, UK",
  volume = "42",
  doi = "10.1111/j.1365-2184.2009.00627.x",
}

@article{Chaste.08:Chaste,
  title = "Chaste: using agile programming techniques to develop computational biology software",
  author = "Pitt-Francis, Joe and Bernabeu, Miguel O and Cooper, Jonathan and Garny, Alan and Momtahan, Lee and Osborne, James and Pathmanathan, Pras and Rodriguez, Blanca and Whiteley, Jonathan P and Gavaghan, David J",
  year = "2008",
  journal = "Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences",
  number = "1878",
  pages = "3111--3136",
  publisher = "The Royal Society London",
  volume = "366",
  doi = "10.1098/rsta.2008.0096",
}